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/*
/*
* Licensed to the Apache Software Foundation (ASF) under one or more
* Licensed to the Apache Software Foundation (ASF) under one or more
* contributor license agreements. See the NOTICE file distributed with
* contributor license agreements. See the NOTICE file distributed with
* this work for additional information regarding copyright ownership.
* this work for additional information regarding copyright ownership.
* The ASF licenses this file to You under the Apache License, Version 2.0
* The ASF licenses this file to You under the Apache License, Version 2.0
* (the "License"); you may not use this file except in compliance with
* (the "License"); you may not use this file except in compliance with
* the License. You may obtain a copy of the License at
* the License. You may obtain a copy of the License at
*
*
* http://www.apache.org/licenses/LICENSE-2.0
* http://www.apache.org/licenses/LICENSE-2.0
*
*
* Unless required by applicable law or agreed to in writing, software
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* See the License for the specific language governing permissions and
* limitations under the License.
* limitations under the License.
*/
*/
package org.apache.any23.cli;
package org.apache.any23.cli;
import org.apache.any23.cli.flows.PeopleExtractor;
import org.apache.any23.rdf.RDFUtils;
import org.apache.any23.rdf.RDFUtils;
import org.apache.commons.codec.digest.DigestUtils;
import org.apache.commons.io.FileUtils;
import org.apache.commons.io.FileUtils;
import org.eclipse.rdf4j.model.IRI;
import org.eclipse.rdf4j.model.Model;
import org.eclipse.rdf4j.model.Model;
import org.eclipse.rdf4j.model.ValueFactory;
import org.eclipse.rdf4j.model.impl.TreeModel;
import org.eclipse.rdf4j.model.impl.SimpleValueFactory;
import org.eclipse.rdf4j.model.impl.TreeModelFactory;
import org.eclipse.rdf4j.model.vocabulary.RDF;
import org.eclipse.rdf4j.model.vocabulary.XMLSchema;
import org.eclipse.rdf4j.rio.Rio;
import org.eclipse.rdf4j.rio.Rio;
import org.junit.Assert;
import org.junit.Assert;
import org.junit.Test;
import org.junit.Test;
import org.slf4j.Logger;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.slf4j.LoggerFactory;
import java.io.BufferedInputStream;
import java.io.BufferedInputStream;
import java.io.File;
import java.io.File;
import java.io.FileInputStream;
import java.io.FileInputStream;
import java.lang.invoke.MethodHandles;
import java.util.Arrays;
import java.util.Arrays;
import java.util.function.Function;
import java.util.stream.Stream;
/**
/**
* This is example for task ANY23-396
* This is example for task ANY23-396
*
*
* @author Jacek Grzebyta (jgrzebyta@apache.org)
* @author Jacek Grzebyta (jgrzebyta@apache.org)
* @author Hans Brende (hansbrende@apache.org)
*/
*/
public class ExtractorsFlowTest extends ToolTestBase {
public class ExtractorsFlowTest extends ToolTestBase {
private static final String testingDatafile = "/org/apache/any23/extractor/csv/test-comma.csv";
private static final Logger log = LoggerFactory.getLogger(MethodHandles.lookup().lookupClass());
public ExtractorsFlowTest() {
public ExtractorsFlowTest() {
super(Rover.class);
super(Rover.class);
}
}
private static final String testingDatafile = "/org/apache/any23/extractor/csv/test-comma.csv";
private static final ValueFactory vf = SimpleValueFactory.getInstance();
private Logger log = LoggerFactory.getLogger(getClass());
/*
Domain ontology & data model
*/
public static final String NAMESPACE = "http://supercustom.net/ontology/";
public static final IRI PERSON = vf.createIRI(NAMESPACE, "Person");
public static final IRI FULL_NAME = vf.createIRI(NAMESPACE, "fullName");
public static final IRI HASH = vf.createIRI(NAMESPACE, "hash");
public static final String DATA_NAMESPACE = "http://rdf.supercustom.net/data/";
// domain ontology person IRI factory
public static Function<String, IRI> personIRIFactory = (String s) -> {
return vf.createIRI(DATA_NAMESPACE, DigestUtils.sha1Hex(s));
};
/**
/**
* Emulates action described in description of issue ANY23-396.
* Emulates action described in ANY23-396.
* @throws Exception
*/
*/
@Test
@Test
public void runTestFor396() throws Exception {
public void runTestFor396() throws Exception {
File outputFile = File.createTempFile("mockdata-", ".ttl", tempDirectory);
File outputFile = File.createTempFile("mockdata-", ".ttl", tempDirectory);
File logFile = File.createTempFile("log-exec-", ".txt", tempDirectory);
File logFile = File.createTempFile("log-exec-", ".txt", tempDirectory);
runTool(String.format("-l %s --workflow -o %s -f turtle -e csv,people -d %s %s",
runTool(String.format("-l %s -o %s -f people,turtle -e csv -d %s %s",
logFile.getAbsolutePath(),
logFile.getAbsolutePath(),
outputFile.getAbsolutePath(),
outputFile.getAbsolutePath(),
"urn:dataser:raw/",
PeopleExtractor.RAW_NS,
copyResourceToTempFile(testingDatafile).getAbsolutePath()));
copyResourceToTempFile(testingDatafile).getAbsolutePath()));
// create some statement of expected model
Model expected = new TreeModelFactory().createEmptyModel();
String[] fullNames = new String[] {"Davide Palmisano", "Michele Mostarda", "Giovanni Tummarello"};
// populate expected model
// populate expected model
Arrays.asList(fullNames).stream().forEach( fullN -> {
Model expected = new TreeModel();
IRI person = personIRIFactory.apply(fullN);
Stream.of("Davide Palmisano", "Michele Mostarda", "Giovanni Tummarello")
expected.add(person, RDF.TYPE, PERSON);
.map(PeopleExtractor::createPerson).forEach(expected::addAll);
expected.add(person, FULL_NAME, vf.createLiteral(fullN));
expected.add(person, HASH, vf.createLiteral(DigestUtils.sha1Hex(fullN), XMLSchema.HEXBINARY));
});
log.info("\n\nlog file content:\n{}", FileUtils.readFileToString(logFile, "utf-8"));
if (log.isDebugEnabled()) {
log.info("\n\nData file: \n{}", FileUtils.readFileToString(outputFile, "utf-8"));
log.debug("\n\nlog file content:\n{}", FileUtils.readFileToString(logFile, "utf-8"));
log.debug("\n\nData file: \n{}", FileUtils.readFileToString(outputFile, "utf-8"));
}
Assert.assertTrue(assertCompareModels(expected, outputFile));
Assert.assertTrue(assertCompareModels(expected, outputFile));
}
}
/**
/**
* Compare expected model and received from input File.
* Compare expected model and received from input File.
* @param expected
* @param received
* @return
*/
*/
public boolean assertCompareModels(Model expected, File received) throws Exception {
private boolean assertCompareModels(Model expected, File received) throws Exception {
Model receivedModel = new TreeModelFactory().createEmptyModel();
Model receivedModel = new TreeModel();
receivedModel.addAll(Arrays.asList(RDFUtils.parseRDF(
receivedModel.addAll(Arrays.asList(RDFUtils.parseRDF(
Rio.getParserFormatForFileName(received.getName()).get(),
Rio.getParserFormatForFileName(received.getName()).orElseThrow(AssertionError::new),
new BufferedInputStream(new FileInputStream(received)),
new BufferedInputStream(new FileInputStream(received)),
received.toURI().toString()
received.toURI().toString()
)));
)));
return receivedModel.containsAll(expected);
return receivedModel.containsAll(expected);
}
}
}
}